Internal Data

The following datasets represent a mix of internal datasets to the MSU Electric Fish Lab, those shared with collaborators, and those released to the public:

Viperidae

SpeciesAssembly TypeVersionDescriptionCitation
Crotalus atroxTranscriptome1.0Croatulus atrox Spinal Cord Transcriptome (unannotated)Unpublished assembly by Jason Gallant
Transcriptome0.8Croatulus atrox Spinal Cord Transcriptome 'trinity_genes' (unpublished)Unpublished assembly by Jason Gallant
Transcriptome1.0Croatulus atrox Spinal Cord Transcriptome (annotated, unpublished)Unpublished assembly by Jason Gallant
Transcriptome0.9Croatulus atria Spinal Cord Transcriptome (Unpublished)Unpublished assembly by Jason Gallant

Torpediniformes

SpeciesAssembly TypeVersionDescriptionCitation
Narcine brasiliensisTranscriptome2.0Narcine brasilensis EO, SM Transcriptome (v.2.0, unpublished)Unpublished assembly by David Luecke
Transcriptome0.9Narcine brasilensis EO, SM Transcriptome (annotated, unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Narcine brasilensis EO, SM Transcriptome (Normalized v.1.0)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.1Narcine brasilensis EO, SM Transcriptome (Normalized v.1.1)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome0.9Narcine brasilensis EO, SM Transcriptome (Unnormalized)Unpublished assembly by Justin RucinskiSophia Sdao
Torpedo marmorataTranscriptome1.1Torpedo mammorata EO, SM TranscriptomeUnpublished assembly by Justin RucinskiSophia Sdao
Transcriptome0.9Torpedo mammorata EO,SM Transcriptome (Annotated, unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome0.8Torpedo mammorata EO, SM Transcriptome (unnormalized, unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Torpedo mammorata EO/SM Transcriptome (normalized, unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome2.0Torpedo mammorata EO, SM Transcriptome (v.2.0, unpublished)Unpublished assembly by David Luecke

Siluriformes

SpeciesAssembly TypeVersionDescriptionCitation
Malapterurus electricusTranscriptome1.0Malapterurus electricus EO, SM TranscriptomeGallant et al. (2014) Science
Transcriptome2.0Malapterurus electricus EO, SM Transcriptome (v2.0, unpublished)Unpublished assembly by David Luecke
Transcriptome0.9Malapterurus electricus EO,SM TranscriptomeGallant et al. (2014) Science

Rajiformes

SpeciesAssembly TypeVersionDescriptionCitation
Leucoraja erinaceaTranscriptome1.0Leucoraja erinacea EO, HEART, LIV, BRAIN, SM TranscriptomeUnpublished assembly by David Luecke

Perciformes

SpeciesAssembly TypeVersionDescriptionCitation
Astroscopus y-graecumTranscriptome2.0Astroscopus y-graecum EO, SM Transcriptome (v2.0, Unpublished)Unpublished assembly by David Luecke
Transcriptome1.0Astroscopus y-graecum EO, SM Transcriptome (v1.0, unpublished)Unpublished assembly by Jason Gallant

Mormyroidea

SpeciesAssembly TypeVersionDescriptionCitation
Brienomyrus brachyistiusTranscriptome1.0Brienomyrus brachyistius genome-guided Somatic Transcriptome (v.1.0, unpublished)Unpublished assembly by Jason Gallant
Genome0.12017 Brienomyrus brachyistius 10x Supernova Assembly (v1.0, 10kb filtered)Unpublished assembly by Chad Tomlinson
Transcriptome0.9Brienomyrus brachyistius EO/SM TranscriptomeGallant et al. (2014) Science
Genome0.22019 Brienomyrus brachyistius 10x Supernova Assembly (v.0.2)Unpublished assembly by Chad Tomlinson
Genome0.3Filtered 2019 Brienomyrus brachyistius 2019 10x Supernova Assembly (v0.3, unpublished)Unpublished assembly by Jason Gallant
Genome0.4Integrated PacBio+HiC Assembly of Brienomyrus Brachyistius (v.0.4, unpublished)Unpublished assembly by Edward Rice
Genome0.12017 Brienomyrus brachyistius 10x Supernova Assembly (v0.1)Unpublished assembly by Chad Tomlinson
Transcriptome1.0Brienomyrus brachyistius EO, SM TranscriptomeGallant et al. (2014) Science
Campylomormyrus compressirostrisTranscriptome1.0Campylomormyrus compressirostrus EO, SM Transcriptome (Trinity - Normalized)Unpublished assembly by Jason Gallant
Transcriptome1.0Campylomormyrus compressirostrus EO TranscriptomeLamanna et al. (2014) Mol Ecol Resour
Transcriptome0.9Campylomormyrus compressirostrus EO, SM Transcriptome (v1.0 - Unnormalized)Unpublished assembly by Jason Gallant
Transcriptome2.0Campylomormyrus compressirostris EO, SM Transcriptome (v2.0, unpublished)Unpublished assembly by David Luecke
Transcriptome1.0Campylomormyrus compressirostrus EO TranscriptomeLamanna et al. (2014) Mol Ecol Resour
Gymnarchus niloticusGenome1.0Gymnarchus niloticus genome assemblyUnpublished assembly by Iridium Genomes
Transcriptome1.0Gymnarchus niloticus EO, SM TranscriptomeSwapna et al. (2018) Curr Biol
Reference Materials0.1Dovetail Assembly of Gymnarchus niloticus (v.0.1)Unpublished assembly by Dovetail Genomics
Reference Materials0.1Dovetail Assembly of Gymnarchus niloticus (v.0.1)Unpublished assembly by Dovetail Genomics
Transcriptome2.0Gymnarchus niloticus EO, SM Transcriptome (v2.0, unpublished)Unpublished assembly by David Luecke
Genome0.2HiRise Assembly of Gymnarchus niloticus Renamed (v.0.2)Unpublished assembly by Dovetail Genomics
Reference Materials0.1Dovetail Assembly of Gymnarchus niloticus (v.0.1)Unpublished assembly by Dovetail Genomics
Genome0.2HiRise Assembly of Gymnarchus niloticus (v.0.2)Unpublished assembly by Dovetail Genomics
Genome0.1Dovetail Assembly of Gymnarchus niloticus (v.0.1)Unpublished assembly by Dovetail Genomics
Mormyrops nigricansTranscriptome1.0Mormyrops nigricans EO Transcriptome (Unpublished)Unpublished assembly by Jason Gallant
Paramormyrops kingsleyaeTranscriptome1.0Paramormyrops kingsleaye (N-Type) 6900 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Reference Materials0.4Canu Assembly of Paramormyrops kingsleyae (APA) (v0.4, unpublished)Unpublished assembly by Jason Gallant
Transcriptome1.0Paramormyrops kingsleyae (All Types Combined) 6898, 6901, 6900,6718, and 6716 TranscriptomeUnpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops kingsleaye (P-Type) 6718 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Reference Materials0.4Canu Assembly of Paramormyrops kingsleyae (APA) (v0.4, unpublished)Unpublished assembly by Jason Gallant
Genome0.3RaGOO Ordering of BioNano Scaffolded P. kingsleyae Assembly (v.0.3, unpublished)Unpublished assembly by Jason Gallant
Reference Materials0.4RaGOO Ordering of Paramormyrops kingslyeae Canu Assembly (APA) (v0.4, unpublished)Unpublished assembly by Jason Gallant
Reference Materials0.4RaGOO Ordering of Paramormyrops kingslyeae Canu Assembly (APA) (v0.4, unpublished)Unpublished assembly by Jason Gallant
Transcriptome1.0Paramormyrops kingsleaye (N-Type) 6901 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops kingsleaye (P-Type) 6716 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Genome0.5RaGOO Ordering of P. kingslyeae Canu Assembly (APA) (v.0.4, unpublished)Unpublished assembly by Jason Gallant
Reference Materials0.4Canu Assembly of Paramormyrops kingsleyae (APA) (v0.4, unpublished)Unpublished assembly by Jason Gallant
Genome0.1Illumina Assembly of Paramormyrops kingsleayeGallant et al. (2017) Genome Biol Evol
Transcriptome1.0Paramormyrops kingsleyae genome-guided somatic transcriptomeGallant et al. (2017) Genome Biol Evol
Genome0.2BioNano Scaffolded Assembly of Paramormoryops kingsleyae (v.0.2, unpublished)Unpublished assembly by Chad Tomlinson
Genome0.4RaGOO Ordering of Paramormyrops kingslyeae Canu Assembly (APA) (v0.4, unpublished)Unpublished assembly by Jason Gallant
Transcriptome1.0Paramormyrops kingsleaye (N-Type) 6898 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Paramormyrops sp. MAGTranscriptome1.0Paramormyrops sp. 'MAG' (Type I) Combined 6787 and 6780 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'MAG' (Type I) 6787 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'MAG' (Type I) 6780 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'MAG' (Type II) 6768 EO Transcriptome (unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'MAG' (Type I + Type II Combined) 6797, 6780,6769,6768 Transcriptome (unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops magnostipes (Type II) 6769 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'MAG' (Type II combined) 6768 and 6769 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Paramormyrops sp. SN3Transcriptome1.0Paramormyrops sp. 'SN3' Combined 6739, 6742 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'SN3' 6742 EO Transcriptome (Unpublished)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0Paramormyrops sp. 'SN3' 6739 EO Transcriptome Unpublished assembly by Justin RucinskiSophia Sdao
Paramormyrops sp. SN3Paramormyrops sp. MAGParamormyrops kingsleyaeTranscriptome1.0All Paramormyrops EO Transcriptome (PMAG, PKINGS, PSN3)Unpublished assembly by Justin RucinskiSophia Sdao
Transcriptome1.0All Paramormyrops EO Transcriptome (PMAG, PKINGS, PSN3)Unpublished assembly by Justin RucinskiSophia Sdao
Petrocephalus soudanensisTranscriptome0.9Petrocephalus soudanensis EO, SM, BR Transcriptome (Swampna et al. 2018, Current Biology)Unpublished assembly by Jason Gallant
Transcriptome1.0Petrocephalus soudanensis EO, SM, BR TranscriptomeSwapna et al. (2018) Curr Biol
Transcriptome2.0P. soudanensis EO,SM,BR Transcriptome v2.0 (Unpublished)Unpublished assembly by David Luecke

Mormyridae

SpeciesAssembly TypeVersionDescriptionCitation
Campylomormyrus tshokweTranscriptome1Campylomormryus tshokwe Transcriptome (v1.0, unpublished)Unpublished assembly by David Luecke

Gymnotiformes

SpeciesAssembly TypeVersionDescriptionCitation
Apteronotus albifronsTranscriptome1.0Apteronotus albifrons skin transcriptome (Soap Denovo)Unpublished assembly by Manoj Samanta
Transcriptome1.0Apteronotus albifrons skin transcriptome (Trinity)Unpublished assembly by Manoj Samanta
Brachyhypopomus gauderioGenome0.2Pacbio Contig assembly for B. gauderio (v0.2)Unpublished assembly by Edward Rice
Genome0.3Unpublished assembly by Edward Rice
Transcriptome1.0Brachyhypopomus gauderio somatic transcriptome assembly (unpublished)Unpublished assembly by David Luecke
Transcriptome1.0Brachyhypopomus gauderio BR, EO, SM, HEARTTian et al. (2017) BMC Evol Biol
Transcriptome1.0Brachyhypopomus gauderio BR, EO, SM, HEARTTian et al. (2017) BMC Evol Biol
Genome0.1Brachyhypopomus gauderio 10x Supernova Assembly (v.0.1, unpublished)Unpublished assembly by Chad Tomlinson
Eigenmannia virescensTranscriptome1.0Eigenmannia EO, SM TranscriptomeGallant et al. (2014) Science
Transcriptome2.0Eigenmannia virescens EO Transcriptome (v.2.0, unpublished)Unpublished assembly by David Luecke
Transcriptome1.0Eigenmannia virescens EO, SM TranscriptomeGallant et al. (2014) Science
Transcriptome0.9Eigenmannia virescens EO,SM Transcriptome (Gallant et al. Science 2014)Unpublished assembly by Manoj Samanta
Electrophorus electricusTranscriptome1.0Electrophorus electricus EO, BR, HEART, SEO, WEO, SC, SM, KID TranscriptomeGallant et al. (2014) Science
Genome0.9Electrophorus electricus 'Prefinal' Genome Assembly (Gallant et al. 2014)Unpublished assembly by Manoj Samanta
Genome1.0E. electricus SOAP Denovo Genome AssemblyGallant et al. (2014) Science
Genome2.0E. electricus SSPACE Denovo Genome AssemblyTraeger et al. (2015) BMC Genomics
Transcriptome0.4Electrophorus electricus EO, BR, HEART, SEO, WEO, SC, SM, KID Transcriptome 'gene-trinity3' (Gallant et al. Science 2014)Unpublished assembly by Manoj Samanta
Genome2.0E. electricus SSPACE Denovo Genome AssemblyTraeger et al. (2015) BMC Genomics
Transcriptome0.2Electrophorus electricus EO, BR, HEART, SEO, WEO, SC, SM, KID Transcriptome 'trinity3-clean-v2' (Gallant et al. Science 2014)Unpublished assembly by Manoj Samanta
Transcriptome0.1Electrophorus electricus EO, BR, HEART, SEO, WEO, SC, SM, KID Transcriptome 'trinity3-clean' (Gallant et al. Science 2014)Unpublished assembly by Manoj Samanta
Transcriptome0.3Electrophorus electricus EO, BR, HEART, SEO, WEO, SC, SM, KID Transcriptome 'trinity-8-tissue' (Gallant et al. Science 2014)Unpublished assembly by Manoj Samanta
Gymnotus omarorumTranscriptome1.0Gymnotus omarorum Transcriptome AssemblyEastman et al. (2020) Sci Rep
Transcriptome1.0Gymnotus omarorum Transcriptome AssemblyEastman et al. (2020) Sci Rep
Sternopygus macrurusTranscriptome2.0Sternopygus macrurus SM, EO Transcriptome (v.2.0, unpublished)Unpublished assembly by David Luecke
Transcriptome1.0Sternopygus macrurus EO,SM TranscriptomeGallant et al. (2014) Science